DNA Damage Atlas

GSM4568568-B_HeLa_shTop1_S2_L002_R1_HWGLVBCXY_V2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11851374


Source Project ID:   

GSE108172

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

shTOP1


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

i-BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000376


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr521680292216805262168051061.8718-
chr532019895320200973202009547.419-
chr920205001202052062020520144.6245-
chr713842649013842670113842650044.3533+
chr222331098922331119422331098944.3445+
chr714815035414815059114815038544.0096+
chr1656843332568435335684333243.7511+
chr223137536423137557023137557043.6182-
chr741456003414562144145601343.5824+
chr1554202391542026015420260143.2887-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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