DNA Damage Atlas

GSM4593287-JH1-4_WT_BM_rep4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11936566


Source Project ID:   

GSE151906

Cell Type:   

BM pro B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113484954113486021113485334173932+
chr12113466088113466592113466375173835+
chr12113483018113484641113483199133333+
chr1211346918811346939911346919199022.2+
chr1211347940211348016311347952086404.3+
chr1211425783111425804211425783349511.1+
chr1211489623311489645111489623840270+
chr1211347226511347273611347253238395.9+
chr1211342793711343059611342946630440.4+
chr1211506012011506032411506012226250.5+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113466370113466584113466375253404+
chr12113428324113429986113429466118134+
chr1211480942111480962811480942133400.2+
chr513698262413698282613698282519596.8-
chr1211553375211553395511553375212511+
chr121153866981153869141153867143352.23+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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