DNA Damage Atlas

GSM4593290-JH1-4_INV_BM_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11936569


Source Project ID:   

GSE151906

Cell Type:   

INV primary BM pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

Igh Inversion,RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113480879113482826113482170192245+
chr12113578295113578772113578504151278+
chr12113430304113430878113430528148757+
chr12113470483113471337113470694146491+
chr12113450650113451400113450851109490+
chr1211345651911345696211345672069697.8+
chr1211346136411346191811346136957801.1+
chr1211347443111347595211347540048498.2+
chr1211346601411346676911346602742436.6+
chr1211344801411344888211344821433088+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12115955373115955637115955583145133-
chr1211735832911735853911735833174196.2+
chr1211347951211348015311348014336863.3+
chr1211342833811342997611342912927502-
chr1211575728311575748711575748719359.7-
chr1211591190811591211211591211018319-
chr121159153101159155211159155119737.46-
chr121157033531157035551157035557019.55-
chr121136614341136616391136616365381.07-
chr121144935361144937391144937393691.08-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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