DNA Damage Atlas

GSM4593291-JH1-4_INV_BM_rep4

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11936570


Source Project ID:   

GSE151906

Cell Type:   

INV primary BM pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

Igh Inversion,RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113578293113578735113578504159299+
chr12113470482113471338113470694139900+
chr12113481063113484360113482170113020+
chr1211345065011345141211345085197670.2+
chr1211342833711343082111343052855512.7+
chr1211346601411346676911346602743402.4+
chr1211347428111347595411347540042557.6+
chr1211346116711346192311346136941986.8+
chr1211345648011345727511345672036882.7+
chr1211344801311344888411344821431827.8+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12115955373115955637115955585145133-
chr1211735832911735853911735833074196.2+
chr1211347951211348015311348014336863.3+
chr1211359710511359731911359731631967-
chr1211575728311575748711575748719359.7-
chr1211591190811591211211591211118319-
chr121159153101159155211159155149737.46-
chr121157033531157035551157035537019.55-
chr121144935361144937391144937383691.08-
chr121173476581173478631173476591841.41+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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