DNA Damage Atlas

GSM4593292-JH1-4_INV_BM_pooled_rep2-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11936571


Source Project ID:   

GSE151906

Cell Type:   

INV primary BM pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

Igh Inversion,RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113466174113466798113466379220722+
chr12115955358115955788115955583174813-
chr12117358327117358565117358332130411+
chr1211348501211348603011348533380629.2+
chr1211359708511359731911359731657512-
chr1211347940211348015311347951455696.8+
chr713059156313059178013059157351960.6+
chr1211560541411560562011560561948261.2-
chr1211347247011347279611347253346488.3+
chr1211575727811575748711575748737126.6-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12115955373115955637115955583145133-
chr12113466174113466721113466379126801+
chr1211735832911735853911735833274196.2+
chr1211347951211348015311347951436863.3+
chr1211359710511359731911359731631967-
chr1211342833811342997611342946627502+
chr1211575728311575748711575748719359.7-
chr1211591190811591211211591211118319-
chr121159153101159155211159155139737.46-
chr121157033531157035551157035537019.55-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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