DNA Damage Atlas


GSM4593296-JH1-4_Wapl-degron_Untreated_rep1




Basic Information

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Sample ID:   

SRR11936550


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

Wapl-degron, OsTIR1, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113484646113482170280332+
chr1211345065011345109511345085146641.8+
chr1211342835511343093111343052846318.5+
chr1211347452511347594911347540040620+
chr1211347049011347094411347069435815.6+
chr1211346136811346159211346136913941+
chr121135782961135787291135785047735.42+
chr121134660251134665821134660277460.17+
chr121134480291134484441134482146928.06+
chr121135880631135884981135882673685.9+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113484646113482170153775+
chr1211342850911343093111343052888932.3+
chr1211348501111348603911348533358367.4+
chr713059156113059178113059157353295.4+
chr1211347516211347594911347540033034.6+
chr513698261613698283113698282531408.4-
chr410261994910262015810262015030915.9-
chr1474845990748461957484619116499.5-
chr790441820904420269044202412858.4-
chr1445812658458128724581285811985.3-
Download the Full Merged Peak List



Motif Analysis

Manual





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