DNA Damage Atlas

GSM4593297-JH1-4_Wapl-degron_Untreated_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11936551


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

Wapl-degron, OsTIR1, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481955113486168113482170174966+
chr1211342835411343113211343052852093.3+
chr1211345064811345109911345085143196+
chr1211347487411347707811347540023625.4+
chr1211347049311347124911347069420530.3+
chr1211346136811346159011346136912683.9+
chr121135782961135787631135785047645.7+
chr121134660241134665841134660276644.27+
chr121134565191134569421134567204707.22+
chr121134480241134491321134482143965.77+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113484646113482170153775+
chr1211342850911343093111343052888932.3+
chr713059156113059178113059157353295.4+
chr1211347516211347594911347540033034.6+
chr513698261613698283113698282531408.4-
chr410261994910262015810262015030915.9-
chr1474845990748461957484619416499.5-
chr790441820904420269044202012858.4-
chr1445812658458128724581285811985.3-
chr510407216310407237010407236311080.3-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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