DNA Damage Atlas

GSM4593299-JH1-4_Wapl-degron_Untreated_pooled_rep1-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11936553


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

Wapl-degron, OsTIR1, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113428509113431132113429466111635+
chr713059156113059179913059157396811.1+
chr513698261613698283313698282561442-
chr410261994710262016210262015059521.3-
chr1211348195311348616811348415648323+
chr1474845989748461987484619032726.4-
chr812605587812605609212605608529752.4-
chr790441810904420329044202023710.9-
chr1445812648458128734581286622694.3-
chr410867898410867919010867918621268.3-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113484646113484156153775+
chr1211342850911343093111342946688932.3+
chr713059156113059178113059157353295.4+
chr513698261613698283113698282531408.4-
chr410261994910262015810262015030915.9-
chr1474845990748461957484619016499.5-
chr790441820904420269044202012858.4-
chr1445812658458128724581286611985.3-
chr510407216310407237010407236311080.3-
chr313555427413555449113555427710573.7+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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