DNA Damage Atlas


GSM4593300-JH1-4_Wapl-degron_IAADox_rep1




Basic Information

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Sample ID:   

SRR11936554


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571 + IAA + Doxycycline


Treatment Time:   

STI-571: 4days + IAA, Dox: 3days


Treatment Dose:   

3uM STI-571 + 150uM IAA + 2mg/mL Dox


Genotype:   

Wapl-degron, OsTIR1, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481969113482736113482170263944+
chr12113428357113430991113430528241310+
chr1211345065011345107311345085177762.5+
chr1211347487511347562611347540066821.7+
chr1211347050411347092811347069446751.4+
chr1211344820911344846011344821422257.7+
chr1211346136811346158911346136918689.8+
chr1211345671911345693611345672015821.2+
chr121134660261134665781134660279721.1+
chr121134801421134803641134801435526.02+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113429794113430942113430528230193+
chr410261995010262015210262015062998.7-
chr1474845990748461917484619026635-
chr790441820904420249044202023876.7-
chr67072354870723885707235485329.6+
chr67072236170723121707225645173.28+
chr11570848851570850861570848854177.61+
chr66918482669185031691848333950.87+
chr121155337521155339541155337533507.42+
chr66950025769500458695002583132.45+
Download the Full Merged Peak List



Motif Analysis

Manual





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