DNA Damage Atlas


GSM4593302-JH1-4_Wapl-degron_IAADox_rep3




Basic Information

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Sample ID:   

SRR11936556


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571 + IAA + Doxycycline


Treatment Time:   

STI-571: 4days + IAA, Dox: 3days


Treatment Dose:   

3uM STI-571 + 150uM IAA + 2mg/mL Dox


Genotype:   

Wapl-degron, OsTIR1, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113428354113430942113430528231520+
chr12113481958113483448113482170127716+
chr1211345064711345111411345085171193.6+
chr1211347049311347091911347069448548.1+
chr1211347487411347663411347540028586.9+
chr1211345671911345693711345672017863+
chr1211344803311344846011344821413411.4+
chr713059156113059179313059157313012+
chr1211346602411346657911346602710554.2+
chr121134613661134619171134613698819.4+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113429794113430942113430528230193+
chr410261995010262015210262015062998.7-
chr1474845990748461917484619126635-
chr790441820904420249044202423876.7-
chr67072236170723121707225615173.28-
chr11570848851570850861570848864177.61+
chr66918482669185031691848313950.87+
chr121155337521155339541155337523507.42+
chr67011706170117261701170632816.56+
chr66830295368303155683031542091.31-
Download the Full Merged Peak List



Motif Analysis

Manual





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