DNA Damage Atlas

GSM4593305-JH1-4_Wapl-degron_single igh_Untreated_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11936559


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

Wapl-degron, OsTIR1, Single Igh, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481947113486147113482170156548+
chr1211347423111347595011347540072555.3+
chr1211345064711345109011345085172420.6+
chr1211342834511343103211343052844236.3+
chr1211347049311347140711347069426430.2+
chr1211346136611346160611346136916641.8+
chr1211345671911345693711345672015088.1+
chr1211344801311344845511344821412655.8+
chr1211357829611357872911357850412172.8+
chr121134660241134665791134660279272.74+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481958113484669113482170241776+
chr12113430315113430794113430528234916+
chr12113474874113475949113475400113706+
chr1211345065011345108011345085172541.1+
chr1211347049311347093711347069455264.4+
chr1211346602611346625611346602720546+
chr1211346136811346158811346136916157+
chr1211345671911345693711345672016075.2+
chr1211344803011344844611344821414376+
chr1211357829611357872011357850413035.1+
Download the Full Merged Peak List


Visualization

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Motif Analysis

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