DNA Damage Atlas

GSM4605891-CSR-HTGTS-Seq_WT_LPS_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11974589


Source Project ID:   

GSE152190

Cell Type:   

Splenic mature B cells


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Treatment Time:   

96hrs


Genotype:   

WT


Targeted break:   

target locus: WT


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

CSR-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr513698261713698282913698282542866.1-
chr713059157213059178113059157332466.1+
chr510407215910407237010407236328712.8-
chr1211328891111329576811329349824456.3-
chr1445812648458128724581286623259.9-
chr1211330441511331137311330896922359.8-
chr1474845990748461957484619420096.2-
chrX14551503314551524314551503419040.7+
chr1733796503379863337986118772.5-
chr1012176307512176328312176327518641.2-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211330571011331108511330896931445.6-
chr1211328944411329576811329349828824.5-
chr1211336334211336870911336598120874.7-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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