DNA Damage Atlas

GSM4605894-CSR-HTGTS-Seq_3CBEsD_IL4_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11974592


Source Project ID:   

GSE152190

Cell Type:   

Splenic mature B cells


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Treatment Time:   

96hrs


Genotype:   

3CBEsD


Targeted break:   

target locus: 3CBEsD


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

CSR-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr513698261613698283113698282582221.1-
chr713059157213059178113059157381664.9+
chr790441820904420339044202078700.4-
chr1445812648458128694581286670335-
chr1122973014229732182297321447809.4-
chr1474845990748461947484619447809.4-
chr410867898410867918710867918646543.5-
chr410261995010262015210262015045265.1-
chr1012176306712176328312176327845153.4-
chrX14551503014551523714551503444171.8+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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