DNA Damage Atlas


GSM4605895-CSR-HTGTS-Seq_3CBEsD_LPS_1




Basic Information

Manual

Sample ID:   

SRR11974593


Source Project ID:   

GSE152190

Cell Type:   

Splenic mature B cells


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Treatment Time:   

96hrs


Genotype:   

3CBEsD


Targeted break:   

target locus: 3CBEsD


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

CSR-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211330686511331109511330864029818.7-
chr1211336509811336848711336606719054.9-
chr121132920951132953781132934877591.98-
chr169486946094869661948694603757.65+
chr26630365966303860663036593757.65+
chr51158878131158880151158880133739.04-
chr92202598522026189220261853702.39-
chr173379650337985933798503613.81-
chr71305915731305917841305915733579.56+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211330705811331109511330864026612.5-
chr713059157313059177713059157325166.5+
chr1211336509811336813211336606717111.5-
chr121132920951132952321132934876401.34-
chr173379650337985933798506021.85-
Download the Full Merged Peak List



Motif Analysis

Manual





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