DNA Damage Atlas

GSM4618700-dox_gh2ax_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12025835


Source Project ID:   

GSE152601

Cell Type:   

Subcutaneous connective tissue


Organism:   

Mus musculus


Strain:   

C3H/An


Treatment:   

Doxycycline


Treatment Time:   

24hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM4618702-Input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA026799133999.7138/
chr101003570001003571991003570993.52824/
chr51503740015037799150375992.73216/
chr41460514001460605991460559991.9925/
chr51546620015466599154663991.99124/
chr41455532001455687991455609991.94375/
chr157766380077664399776640991.72738/
chr41456026001456031991456028991.72738/
chr41475140001475419991475279991.62074/
chr41475072001475125991475098991.58451/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA026799133999.7138/
chr41475146001475329991475279991.94821/
chr41455532001455687991455609991.94375/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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