Sample Detail

Basic Information

Manual

Sample ID:

SRR12025836

Source Project ID:

GSE152601

Cell Type:

Subcutaneous connective tissue

Organism:

Mus musculus

Strain:

C3H/An

Treatment:

Doxycycline

Treatment Time:

24hrs

Layout:

SINGLE

Instrument model:

NextSeq 500

Technique:

ChIP-seq (anti-γH2AX)

Others:

control: GSM4618702-Input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	0	26799	13399	14.5496	/
chr2	122681200	122682399	122681799	12.8023	/
rDNA	42000	45199	43599	12.6744	/
rDNA	38800	40799	39799	4.39014	/
chr4	147514600	147532999	147523799	1.9609	/
chr4	145551400	145568799	145560099	1.76085	/
chr3	108062200	108062999	108062599	1.61408	/
chr5	8373400	8374199	8373799	1.61408	/
chr3	100605200	100606199	100605699	1.6058	/
chr19	8807800	8808799	8808299	1.54283	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	0	26799	13399	14.5496	/
chr4	147514600	147532999	147523799	1.9609	/
chr4	145553200	145568799	145560099	1.85918	/
chr3	100605200	100606199	100605699	1.6058	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download