DNA Damage Atlas


GSM4618701-dox_gh2ax_2




Basic Information

Manual

Sample ID:   

SRR12025836


Source Project ID:   

GSE152601

Cell Type:   

Subcutaneous connective tissue


Organism:   

Mus musculus


Strain:   

C3H/An


Treatment:   

Doxycycline


Treatment Time:   

24hrs


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM4618702-Input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339914.5496/
chr212268120012268239912268179912.8023/
rDNA42000451994359912.6744/
rDNA3880040799397994.39014/
chr41475146001475329991475237991.9609/
chr41455514001455687991455600991.76085/
chr31080622001080629991080625991.61408/
chr58373400837419983737991.61408/
chr31006052001006061991006056991.6058/
chr198807800880879988082991.54283/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0267991339914.5496/
chr41475146001475329991475237991.9609/
chr41455532001455687991455600991.85918/
chr31006052001006061991006056991.6058/
Download the Full Merged Peak List



Motif Analysis

Manual





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