Sample Detail

Basic Information

Manual

Sample ID:

SRR12025840

Source Project ID:

GSE152601

Cell Type:

Subcutaneous connective tissue

Organism:

Mus musculus

Strain:

C3H/An

Treatment:

Doxycycline + Hydroxyurea

Treatment Time:

24hrs + 16hrs

Treatment Dose:

Hydroxyurea: 1mM

Layout:

SINGLE

Instrument model:

NextSeq 500

Technique:

ChIP-seq (anti-γH2AX)

Others:

control: GSM4618702-Input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	0	26799	13399	12.5233	/
rDNA	38800	40999	39899	5.07141	/
chr5	15591600	15591999	15591799	3.82294	/
chr2	122678200	122683999	122681099	3.04539	/
chr15	62318400	62362599	62340499	2.2969	/
chr15	62228800	62316199	62272499	2.27196	/
chr6	38552000	38603599	38577799	1.96027	/
chr3	108547600	108691799	108619699	1.87209	/
chr3	108810000	108816799	108813399	1.8297	/
chr5	5450000	5467399	5458699	1.75728	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	0	26799	13399	12.5233	/
rDNA	38800	40999	39899	5.07141	/
chr15	62318400	62362599	62340499	2.2969	/
chr15	62228800	62316199	62272499	2.27196	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download