DNA Damage Atlas

GSM4630495-SK1_zip3Δ homeologous_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12066921


Source Project ID:   

GSE152957

Cell Type:   

meiotic Saccharomyces cerevisiae culture


Organism:   

Saccharomyces cerevisiae SK1


Strain:   

SK1


Genotype:   

zip3Δ homeologous mutant


Harvested Time:   

5 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI9464696610957972869.29+
chrXVI8122718136528129952128.62+
chrII6421906434986429032005.69+
chrIX2674552691912684401980.27+
chrIV8345388369248359361927.38-
chrIII5641657387567531883.75-
chrX2802082814612808791836.91+
chrVII6089106108876100041825.22-
chrX3221733236773232851805.14+
chrVIII1431071442231437741714.69+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVI9488496610957973241.4+
chrXVI8122718135678129952828.02+
chrIV8347688369248359362523.72-
chrXIV4265394279394270532099.07-
chrVII6089506108266100042066.43-
chrII6421906434986429031884.66+
chrIII5641657387567531841.01-
chrII2578382584232581821839.09+
chrXII8708848721698715241794.2+
chrIV1980231991941985831760.62+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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