DNA Damage Atlas

GSM4630498-SK1_homeologous_4h

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12066924,SRR12066925


Source Project ID:   

GSE152957

Cell Type:   

meiotic Saccharomyces cerevisiae culture


Organism:   

Saccharomyces cerevisiae SK1


Strain:   

SK1


Genotype:   

homeologous strain


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrIV8350398368568358623080.1+
chrVI9480996596958182692.04+
chrVII6089526109486101692319.37-
chrIV1981211991951985832300.56+
chrVIII5160115179885173731990.09+
chrVIII1215321230181221671955.66+
chrVIII1886841914241903451873.28+
chrX7047787060617053111744.77+
chrXVI8122698135738129951734.44+
chrX2801972813732808791654.45+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXIII7977777987357982203915.95+
chrVII8482078494308487523718.21-
chrVI9498996588958183396.63+
chrXV9432599438519435673338.93-
chrVIII4222604231274226253337.01-
chrII2169972176892172123334.56-
chrXI4020014027054021913255.97-
chrIV8353788366658358323195.68+
chrXIV4267074277924274773163.18+
chrXIII6669396677276674252947.36+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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