DNA Damage Atlas

GSM4644423-RTX_UGI_HCT116MMR_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12107047


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Raltitrexed


Treatment Time:   

48hrs


Treatment Dose:   

100nM


Genotype:   

MMR proficient; transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4644424-RTX_UGI_HCT116MMR_rep1_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr162254271022544046225437842.61893/
chr12349118892349137872349132822.47843/
chr11495814081495819491495817122.44326/
chr162251896522520204225198452.38468/
chr12349138292349193532349140992.37172/
chrUn_gl0002201483923061179982.24124/
chr162252219722523113225226852.22819/
chr7_gl000195_random1231315253128382.19507/
chr91170859471170875951170868812.1467/
chr128363526836504383639872.12706/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12349138292349157612349140992.75677/
chr12349120132349137872349132822.6188/
chr51760149211760152061760150102.38716/
chr128363528836450683639872.36519/
chr128369896837181083715712.0921/
chr35820690558207447582069612.08011/
chr121317068013171239131708342.01685/
chr31411239351411243061411240271.99098/
chr51490728131490735181490729751.95761/
chrUn_gl0002203277135354341141.94909/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab