Sample Detail

Basic Information

Manual

Sample ID:

SRR12107049

Source Project ID:

GSE126822

Cell Type:

HCT116

Organism:

Homo sapiens

Treatment:

Raltitrexed

Treatment Time:

48hrs

Treatment Dose:

100nM

Genotype:

MMR proficient; transgene: UGI

Layout:

PAIRED

Instrument model:

Illumina NovaSeq 6000

Technique:

U-DNA-seq

Others:

control: GSM4644426-RTX_UGI_HCT116MMR_rep2_son.hg19

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr3	13658071	13659191	13658893	2.33785	/
chr1	234912013	234915761	234914608	2.19701	/
chr17	47944200	47945216	47944654	2.0795	/
chr1	228506760	228508916	228507513	2.05204	/
chr16	87664284	87665853	87665433	1.99109	/
chr17	47935336	47936135	47935558	1.98886	/
chr9	117087787	117088501	117088218	1.97271	/
chr3	53171721	53172875	53172259	1.94037	/
chr10	102364845	102366011	102365312	1.93588	/
chr3	48341008	48342260	48341463	1.93272	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr1	234913829	234915761	234914608	2.42081	/
chr9	117087787	117088501	117088218	1.97271	/
chr17	47998507	48000041	47999800	1.96589	/
chr3	66021433	66021966	66021471	1.96503	/
chr3	12911283	12912396	12911729	1.96317	/
chr12	8369896	8371810	8370543	1.9341	/
chr3	52928513	52929225	52928596	1.87681	/
chr1	19843302	19844065	19843534	1.86969	/
chr17	65872410	65873586	65873073	1.858	/
chr17	45301487	45302443	45302382	1.83224	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download