DNA Damage Atlas

GSM4644427-NT_UGI_HCT116MMR_rep1_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12107051


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

MMR proficient; transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4644428-NT_UGI_HCT116MMR_rep1_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr211058335710584237105839156.26827/
chr81228377791228384161228381944.22264/
chr213408496134086510340857663.76239/
chr11926834371926837821926836083.50281/
chr31855024961855028491855026713.31299/
chr141059036161059043051059038213.28158/
chr171671883616719376167191753.17638/
chr34560859945609386456088913.17015/
chr61437294561437302461437299423.15811/
chr101149536161149545231149540063.05158/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr211058340810584115105839157.71939/
chr213408507934086262340857664.7946/
chr141059036361059041111059038214.71898/
chr19167138591671757916715944.61088/
chr127752290977523373775231334.32677/
chr81228377791228384161228381944.22264/
chr81391836413918837139186754.12081/
chr171671891916719353167191753.95218/
chr33339939334070433404123.51611/
chr11926834371926837821926836083.50281/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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