DNA Damage Atlas

GSM4644429-NT_UGI_HCT116MMR_rep2_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12107053


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

MMR proficient; transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4644430-NT_UGI_HCT116MMR_rep2_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr211058340810584115105839163.92171/
chr12539592254047925401633.82301/
chr165742229957423511574228323.35744/
chr22233410092233425672233418843.34159/
chr168206174182063235820623533.29782/
chr29669955396699975966997743.21423/
chr53483470348504734840103.16219/
chr195406192854063858540635143.01791/
chr82173032217393121733972.9954/
chr63401151234013051340125132.96809/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr165742256557423328574228325.17632/
chr53483862348482734840104.75424/
chr167328121873282041732815214.72623/
chr22233414152233425162233418844.42061/
chr195406311754063825540635144.33878/
chr161316272013163201131629774.27142/
chr101278313991278321121278317864.1405/
chr222802761528028180280279524.13064/
chr76691739266918091669176144.10928/
chr22396560862396567862396565824.01792/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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