DNA Damage Atlas

GSM4644431-NT_UGI_HCT116_rep2_ctr

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12107055


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144351-NT_UGI_HCT116_rep2_son.hg19


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random72777730647291918.0568/
chrUn_gl000226027113412.4621/
chrUn_gl0002141340701352851344747.33242/
chr4_gl000193_random8041280692805514.15915/
chr154862613748627585486270872.63393/
chrUn_gl0002243488140659379602.5597/
chr81067125831067132201067130211.8739/
chr31752495871752501731752497781.83826/
chr127193494971935508719353321.82288/
chr89467654394677144946768751.79238/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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