DNA Damage Atlas


GSM4644432-5FdUR_UGI_HCT116_rep2_ctr




Basic Information

Manual

Sample ID:   

SRR12107056


Source Project ID:   

GSE126822

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

5-FUdR


Treatment Time:   

48hrs


Treatment Dose:   

20uM


Genotype:   

transgene: UGI


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

U-DNA-seq


Others:   

control: GSM4144343-5FdUR_UGI_HCT116_rep2_son.hg19


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7_gl000195_random7915782928808412.4143/
chr7_gl000195_random1420571432631423582.00199/
chr154862600748627558486270841.95665/
chr211061105410612306106118441.75434/
chr175953249459533607595331441.71734/
chrUn_gl0002191704471734211716241.7026/
chr12349122782349157982349145551.70048/
chr81344363231344370431344366351.60681/
chr81439949641439957501439952721.57854/
chr101157818881157829111157824311.57341/
Download the Full Peak List



Motif Analysis

Manual





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