DNA Damage Atlas

GSM4644835-HEK_saC9_RAG1_spC9_VEGFA_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12108013


Source Project ID:   

GSE153471

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

nuclease delivery: Transfection; saCas9:RAG1.1 + SpCas9:VEGFA


Genotype:   

WT


Targeted break:   

RAG1 (saCas9:RAG1.1 gRNA)


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr223766124237663669376628246801.62-
chr64373548443739687437374705172.57-
chr116885027068852667688511385063.78-
chr51154331781154358631154346754379.99-
chr141060287521060292331060290313588.93+
chr58944035689441815894409693549.58+
chr146556801465570247655691592633.29-
chr202017787520178730201782842397.61+
chr109876037898760871987605871422.52-
chr31939934661939945121939938831340.92-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2237661242376636533766282410524.5-
chr116885041668852667688511388295.14-
chr58944035689441815894409696068.05+
chr51154334061154358631154346756058.29-
chr202017807520178590201782845556.21+
chr141060288241060292331060290314858.02+
chr31939935471939940971939938834706.08-
chr146556816565570247655691593530.49-
chr109876037898760804987605873352.72-
chr126936816693725569370552082.1-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab