DNA Damage Atlas

GSM4644840-HEK_saC9_RAG1_spC9D10A_VEGFA_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12108018


Source Project ID:   

GSE153471

Cell Type:   

293T


Organism:   

Homo sapiens


Treatment:   

nuclease delivery: Transfection; saCas9:RAG1.1 + SpCas9D10A:VEGFA


Genotype:   

WT


Targeted break:   

RAG1 (saCas9:RAG1.1 gRNA)


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr15504657355047002550467922688.93-
chr64373651743737773437374701802.85-
chr87288907672889496728892851627.58-
chr89931705499317493993172841362.5-
chr14106028822106029033106029032809.935-
chr11763743207637452176374520637.673-
chr10959339689593416995934168425.115-
chr1230842529230842730230842529425.115+
chr22190566581905685919056858425.115-
chr22436715414367174243671541425.115+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr15504658155046994550467923478.07-
chr64373724343737671437374703120-
chr87288908572889489728892852852.61-
chr89931708499317485993172841256.27-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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