DNA Damage Atlas


GSM4663366-ENDSeq-KM12-APH-ATRi




Basic Information

Manual

Sample ID:   

SRR12179492


Source Project ID:   

GSE149706

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Aphidicolin + ATR inhibitor


Treatment Time:   

8hrs


Treatment Dose:   

0.2ug/mL Aphidicolin + 10uM ATRi


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4663367-ENDseq-KM12-NT-for-APH-ATRi


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000656



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr53352031933522643335214936.65105-
chr73123116931231977312311766.55545+
chr32869456228695453286945626.51224+
chr65009294450094715500936916.41675-
chr67356142373563425735623646.39792-
chr144251535642517597425164896.31723-
chrX3638233336384057363830816.18668+
chrUn_gl0002251344791353951350696.04538-
chrX9809500798095516980950145.67616+
chr158029576780296982802966355.64755-
Download the Full Peak List



Motif Analysis

Manual





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