DNA Damage Atlas


GSM4663368-ENDseq-HCT116-APH-ATRi




Basic Information

Manual

Sample ID:   

SRR12179494


Source Project ID:   

GSE149706

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Aphidicolin + ATR inhibitor


Treatment Time:   

8hrs


Treatment Dose:   

0.2ug/mL Aphidicolin + 10uM ATRi


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4663369-ENDseq-HCT116-NT-for-APH-ATRi


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.016068



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX37729869377301643773007132.738-
chr2076434347644015764401516.8973-
chrUn_gl00022513154513214713180116.6393-
chr1359601227596017835960124713.6376+
chr611698455117025081170065010.6736-
chr1480207112802076758020711710.0656+
chr91031713943114908.9589+
chr81071615091071653921071637038.43789-
chr101158426951158444401158438788.09592+
chr11958896511958940041958919057.29764-
Download the Full Peak List



Motif Analysis

Manual





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