DNA Damage Atlas


GSM4663370-ENDseq-RPE1-APH-ATRi




Basic Information

Manual

Sample ID:   

SRR12179496


Source Project ID:   

GSE149706

Cell Type:   

RPE1


Organism:   

Homo sapiens


Treatment:   

Aphidicolin + ATR inhibitor


Treatment Time:   

8hrs


Treatment Dose:   

0.2ug/mL Aphidicolin + 10uM ATRi


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4663371-ENDseq-RPE1-NT-for-APH-ATRi


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.020786



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr629189544291901242919012413.7933-
chr310176068210176144310176117813.1644-
chr814629907814630151714630101211.7905+
chr112613649926137055261367799.00912-
chrUn_gl0002161441951457551451897.6+
chr86531615865316725653161597.56322+
chr165992064736605996.4725-
chr75643463956435820564353436.37733-
chrUn_gl0002251126661135131131535.3608-
chr21047515795108455.07356-
Download the Full Peak List



Motif Analysis

Manual





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