DNA Damage Atlas


GSM4663372-ENDseq-eHAP-APH-ATRi




Basic Information

Manual

Sample ID:   

SRR12179498


Source Project ID:   

GSE149706

Cell Type:   

eHAP


Organism:   

Homo sapiens


Treatment:   

Aphidicolin + ATR inhibitor


Treatment Time:   

8hrs


Treatment Dose:   

0.2ug/mL Aphidicolin + 10uM ATRi


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4663373-ENDseq-eHAP-NT-for-APH-ATRi


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.165638



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021462895667466507624.9407+
chrX37729870377302633773007113.3796-
chr814629901114630151714630101211.7743+
chrUn_gl00021680424812028071210.9888-
chr310176058510176127610176117810.9489-
chrUn_gl0002161317721328021322016.721+
chr91018816721106966.39838-
chrUn_gl0002257345375981748556.09028-
chrUn_gl0002251332331343111337736.07082-
chr75643456256435819564353425.95868-
Download the Full Peak List



Motif Analysis

Manual





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