DNA Damage Atlas

GSM4680451-dmc1_TrAEL-seq

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12279038


Source Project ID:   

GSE154811

Organism:   

Saccharomyces cerevisiae


Strain:   

SK1 dmc1


Treatment:   

Sporulation for 7 hours


Genotype:   

dmcΔ


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

TrAEL-seq


Others:   

fix and post-processing: 70% ethanol


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
III036130413799.7-
XIV78403978447878407913767+
MT62401627156257913567.7-
MT50568509665077613215.5+
MT57716579815783110943.6+
MT53549539165371510936.8-
MT40239407264040710605.6-
MT56397573665668310283.6+
VIII5624655627875625239907.92+
MT5217352447523739469.61+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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