DNA Damage Atlas

GSM4680459-3xCUP1_TrAEL-seq

Basic Information Genome Browser Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR12279046


Source Project ID:   

GSE154811

Organism:   

Saccharomyces cerevisiae


Strain:   

BY4742 3xCUP1


Treatment:   

SD


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

TrAEL-seq


Others:   

fix and post-processing: 70% ethanol


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
III036927817834.6-
XIV78402178446478420913087.3+
VIII5624125627775626029007.96+
XI6665806669656666868617.99+
XII4598894607484605058096.54+
VIII5568285571375569147716.37+
XII1104911358112737475.97-
VI4537482247116843.29-
MT5040150884505885796.43-
MT5355353923536955579.05-
Download the Full Peak List


Visualization

Manual





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