DNA Damage Atlas

GSM4680466-hESC_Retinoic_acid_TrAEL-seq

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR12279053


Source Project ID:   

GSE154811

Cell Type:   

hESC


Organism:   

Homo sapiens


Treatment:   

retinoic acid-induced differentiation


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

TrAEL-seq


Others:   

fix and post-processing: none


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM1474716525161065057.59-
chrM2620349632303344.94-
chr195911888659119118591189673033.69+
chrM5401601655342879.58-
chrM011676612819.38-
chrM2020244723602541.6-
chrM1484169316202361.51-
chr214811976348120030481198581907.76+
chr21821403771821405871821405241450.92-
chr7159128563159128795159128636771.958+
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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