DNA Damage Atlas

GSM4680467-hESC_untreated_TrAEL-seq

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12279054


Source Project ID:   

GSE154811

Cell Type:   

hESC


Organism:   

Homo sapiens


Treatment:   

N2B27 + retinoic acid


Treatment Dose:   

3uM


Layout:   

SINGLE


Instrument model:   

NextSeq 500


Technique:   

TrAEL-seq


Others:   

fix and post-processing: none


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr195911888459119114591189672912.2+
chrM5404588357062712.22-
chrM1493516518161062326.33-
chrM2624345832302269.23-
chr214811976048120028481198641925.61+
chrM2079243621521780.51-
chrM1145611661115721741.12-
chrM01186231671.54-
chrM1492184316001534.31-
chr21821403781821405861821405241102.22-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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