DNA Damage Atlas

GSM4803108-ΔrnhB782_kan-replicate2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12712331


Source Project ID:   

GSE158570

Organism:   

Escherichia coli


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
Chromosome3863128386631738656381400.67+
Chromosome460760462218461806763.312-
Chromosome458746645888934588170726.96+
Chromosome465155468870465849726.224-
Chromosome212371921250552124359722.763+
Chromosome364792336492563648650714.946-
Chromosome417573041785854177566709.949-
Chromosome212169213973213209706.936+
Chromosome326336832647003263921698.47+
Chromosome444982244522764451017691.548-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
Chromosome3863128386630338656381463.24+
Chromosome458751645888934588170889.33+
Chromosome417673241785604177566888.558-
Chromosome212338213973213209838.789+
Chromosome460760462188461806825.886-
Chromosome364792436492323648650805.027-
Chromosome465178468870465849783.632-
Chromosome212373721250412124359776.244+
Chromosome221639222862222137760.165+
Chromosome978438979717979036734.319-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab