DNA Damage Atlas


GSM4804869-JH1-4_Wapl-degron_single igh_IAADox_rep2




Basic Information

Manual

Sample ID:   

SRR12727818


Source Project ID:   

GSE151906

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG1/2 retrovirus infected + STI-571 + IAA + Doxycycline


Treatment Time:   

STI-571: 4days + IAA, Dox: 3days


Treatment Dose:   

3uM STI-571 + 150uM IAA + 2mg/mL Dox


Genotype:   

Wapl-degron, OsTIR1, Single Igh, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 550


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113482828113482170226723+
chr12113428359113430873113430528220245+
chr1211347468411347590311347540076190+
chr1211345065011345131911345085162354+
chr1211347048911347091711347069458056.6+
chr1211346136811346158611346136923566.1+
chr1211344801311344844511344821413696.1+
chr1211346602411346658311346602710966.3+
chr1211345651911345694011345672010505.1+
chr71305915611305917911305915737423.95+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113482418113482170591544+
chr12113428359113430787113430528173566+
chr12113474875113475736113475400139988+
chr12113450650113451076113450851128382+
chr1211347049311347091711347069467802.2+
chr1211346602611346624411346602738013.7+
chr1211346136811346158611346136932352.3+
chr1211344820911344844511344821416213.6+
chr1211345651911345692911345672014425+
chr713059157213059178013059157311907.9+
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab