DNA Damage Atlas

GSM4847766-MEF_NT

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12868814,SRR12868815


Source Project ID:   

GSE159807

Cell Type:   

MEF


Organism:   

Mus musculus


Treatment:   

NT


Harvested Time:   

repair time: none


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Circle-damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM665553335136.082/
rDNA42008436214243838.6531/
chrX76598567765992367659900135.6333/
chrX14348291114348325014348313432.4557/
chr124612931246133042461304331.9554/
chrUn_JH58430473064733237319224.7804/
chr239644013964703396455718.216/
chr1311960008911960055511960032015.7403/
chr927867309278676062786745315.4356/
chr591678592916789579167873315.0719/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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