DNA Damage Atlas

GSM4880378-BLISS8_shCTR9_A1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981438, SRR12981439, SRR12981440


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Ethanol


Genotype:   

shCTR9


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.19697


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201584361607391590411369.53+
chrUn_gl0002201144641167671150691358.1+
chrUn_gl000220153006155274154644790.383-
rDNA350258515252752.862-
chrUn_gl000220108922111261110672748.583-
chr8835703808357058883570383579.701+
rDNA6276129529636538.338+
chr6442822144284434428234381.846+
chr1249161276249161484249161276344.307+
chrUn_gl000216751537657675833223.905-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand