DNA Damage Atlas

GSM4880379-BLISS8_shCTR9_A2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981441, SRR12981442, SRR12981443


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

24hrs


Treatment Dose:   

1ug/ml


Genotype:   

shCTR9


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.266667


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220158558160389160148738.145-
chrUn_gl000220114519116407116176706.693-
chrUn_gl000220108784111033110670514.474-
chrUn_gl000220153014155262154679504.805-
rDNA353358495250501.37-
rDNA91531295210736381.36-
chrUn_gl000216754957634475833350.417-
chrUn_gl000216804248125380711320.101-
chr2227372617227372817227372617226.631+
chrUn_gl00021642028841860177.599-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand