DNA Damage Atlas

GSM4880380-BLISS8_shCTR9_A3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981444, SRR12981445, SRR12981446


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Ethanol


Treatment Time:   

24hrs


Genotype:   

shCTR9


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.185714


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr132937403729374238293740372580.08+
rDNA3519606243352561.3+
chrUn_gl0002201529731555581537272465.39+
chrUn_gl0002201144601185221152712421.05+
rDNA90341302398382399.76+
chrUn_gl0002201087601115621097552252.38+
chr156679529166795783667955831682.63+
chr111229296151229298181229296151289.05+
chr64428228442844044282341267.99+
chr1648824176488270764882507680.853+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand