DNA Damage Atlas

GSM4880381-BLISS8_shCTR9_A4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981447, SRR12981448, SRR12981449


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

24 hrs


Treatment Dose:   

1ug/ml


Genotype:   

shCTR9


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.038462


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201089371112901097631429.74-
chrUn_gl0002201529091552621537351429.74-
rDNA3415613643431285.51-
rDNA908513023101991267.95+
chrUn_gl000220111716118485115639813.803+
chr6442819644284404428235690.217+
chr6528603805286075052860749631.721-
chr1894585988945880289458600375.252+
chr4170891517091701708965252.169+
chrUn_gl000216801718111480708245.7-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand