DNA Damage Atlas

GSM4880382-BLISS8_shCTR9_A5

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981450, SRR12981451, SRR12981452


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

3hrs


Treatment Dose:   

25uM


Genotype:   

shCTR9


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.087805


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6528603795286076252860748928.115-
rDNA359758614342895.683-
chrUn_gl000220152996155262153734890.625-
chrUn_gl000220109011111290109762888.777-
chrUn_gl000220114494118427115279844.219+
rDNA9060130789846827.734+
chr6442822344284494428235495.087+
chrUn_gl000216751977659475830213.251-
chrUn_gl000216802418154980696200.303-
chr421583503215838622158364598.7597+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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