DNA Damage Atlas

GSM4880383-BLISS8_W11_Etoposide_A1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981453, SRR12981454, SRR12981455


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Ethanol


Treatment Time:   

24hrs


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005181


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201525851552751536413973.57+
rDNA3189615742493587.97+
chrUn_gl0002201130991164521150693566.73+
rDNA63381129996363032.33+
chrUn_gl0002201086131128121096693022.47+
chr64428192442843944282341394.38+
chr1100719272100719476100719272763.552+
chr1894583988945896189458600617.894+
chr3125497681254997012549970608.322-
chr17555231935552346055523394525.049-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab