DNA Damage Atlas

GSM4880384-BLISS8_W11_Etoposide_A2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981456, SRR12981457, SRR12981458


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

3hrs


Treatment Dose:   

25uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.792683


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201529531555331535734730.07+
chrUn_gl0002201584611607351601484541.87-
rDNA3375621241814297.35+
chrUn_gl0002201089811131951096013006.61+
chrUn_gl0002201145201185111161762797.49-
rDNA905513065107362750.46-
chr64428228442844044282352086.18+
chr1894586008945893189458600994.356+
chr12828493548284955682849355950.463+
chr19300194903001969230019491704.361+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab