DNA Damage Atlas

GSM4880385-BLISS8_W11_Etoposide_A3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981459, SRR12981460, SRR12981461


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

24hrs


Treatment Dose:   

1ug/ml


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.272727


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA3469580943303581.42+
chrUn_gl0002201089211112491097553568.6+
rDNA90551097398383220.69+
chrUn_gl0002201144881164131152713182.96+
chrUn_gl0002201526291552711537273166.87+
chrUn_gl0002201584601607341592432766.53+
chr156679528866795783667955832455.41+
chr64428228442844044282341138.04+
chr17622233096222352362223515978.501-
chr1894583988945892289458600790.547+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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