DNA Damage Atlas

GSM4880386-BLISS8_W11_Etoposide_A4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981462, SRR12981463, SRR12981464


Source Project ID:   

GSE160849

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Doxycycline + Etoposide


Treatment Time:   

24hrs + 3hrs


Treatment Dose:   

1ug/ml Doxycycline + 25uM Etoposide


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.114286


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA882510954101882715.94+
chrUn_gl0002201584861607351596002579.21+
chrUn_gl0002201088741113691097291858.94+
rDNA3366587943091835.04+
chrUn_gl0002201527641553951537011709.17+
chrUn_gl0002201142811185401156281506.15+
chr65286043352860750528607491343.01-
chr18945839889458921894586001041.01+
chr6442822644284394428235893.676+
chr5289721632897236528972364861.28-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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