DNA Damage Atlas

GSM4880389-BLISS_MYC_AID_A5

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12981471, SRR12981472, SRR12981473


Source Project ID:   

GSE160849

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

3hrs


Treatment Dose:   

25uM


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6442822344286664428234334.165+
chrUn_gl000220109156110960109744273.442+
rDNA364556104324251.037+
chrUn_gl000220153045155016153716247.803+
chr6528604615286074952860748223.189-
chrUn_gl000221392173979039369220.108+
chr10120801581120802612120802061185.62-
chrM192863415376172.251-
chrUn_gl000224105951277311878172.157+
rDNA9363109409780170.142+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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