DNA Damage Atlas


GSM4886894-JH1-4_Wapl-degron_single Igh_INV_IAADox_rep3




Basic Information

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Sample ID:   

SRR12996677


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

RAG1/2 retrovirus infected + STI-571 + IAA + Doxycycline


Treatment Time:   

STI-571: 4days + IAA, Dox: 3days


Treatment Dose:   

3uM STI-571 + 150uM IAA + 2mg/mL Dox


Genotype:   

Wapl-degron, OsTIR1, Single Igh, Emu-Bcl2, RAG1 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481965113482416113482170737171+
chr12113474688113475626113475400202212+
chr12113450648113451455113450851109238+
chr1211347049211347124411347069487587+
chr1211342815311343103311343052884490.8+
chr1211344801311344844711344821428204+
chr1211345651911345695111345672025175.3+
chr1211346118011346159811346136922579+
chr1211346582611346658111346602718326.3+
chr121135782971135787161135785049873.31+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481966113482406113482170796274+
chr12113450850113451065113450851406510+
chr12113430327113430887113430528387877+
chr12113474876113475623113475400244612+
chr12113470493113470990113470694126009+
chr1211346602711346624711346602760844.5+
chr1211345671911345693111345672055403.8+
chr1211346136811346158811346136945573.6+
chr1211344801611344844011344821423322.4+
chr1211357850311357871411357850416687.8+
Download the Full Merged Peak List



Motif Analysis

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