DNA Damage Atlas


GSM4886897-v-Abl_cycling_Rep3




Basic Information

Manual

Sample ID:   

SRR12996680


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

RAG2 retrovirus infected, 3 uM STI 4 days


Genotype:   

Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6691109036911112069110904197727+
chr6700740217007423070074025186950+
chr6697007666970098069700769157839+
chr6698146286981483769814632155500+
chr6706078267060804070608035129684-
chr6682566616825687268256868103838-
chr6687362976873651568736300102179+
chr669184825691850376918483199042+
chr669042969690431826904297795148.2+
chr670116860701172697011706283478.7+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6691109036911111069110904145658+
chr5136982618136982826136982825120718-
chr6697007676970097369700769108319+
chr6698146286981483569814632105930+
chr6700740217007422870074025102569+
chr670117058701172677011706284365.6+
chr670607832706080367060803582237.5-
chr669184826691850316918483175969.5+
chr669016559690167646901656074110.9+
chr669042973690431796904297766355.6+
Download the Full Merged Peak List



Motif Analysis

Manual





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