DNA Damage Atlas

GSM4886897-v-Abl_cycling_Rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR12996680


Source Project ID:   

GSE151906

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

RAG2 retrovirus infected, 3 uM STI 4 days


Genotype:   

Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6691109036911112069110904197727+
chr6700740217007423070074025186950+
chr6697007666970098069700769157839+
chr6698146286981483769814632155500+
chr6706078267060804070608035129684-
chr6682566616825687268256868103838-
chr6687362976873651568736300102179+
chr669184825691850376918483199042+
chr669042969690431826904297795148.2+
chr670116860701172697011706283478.7+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6691109036911111069110904145658+
chr5136982618136982826136982825120718-
chr6697007676970097369700769108319+
chr6698146286981483569814632105930+
chr6700740217007422870074025102569+
chr670117058701172677011706284365.6+
chr670607832706080367060803582237.5-
chr669184826691850316918483175969.5+
chr669016559690167646901656074110.9+
chr669042973690431796904297766355.6+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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